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Check your platformbytes that will determine it most of the time.
cd de platformbytes will give the info. But I'm not where I can look the info up.
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I found one in BIOS > platformbytes, the value is :
Platform Bytes are "3.1.1"
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On a v1 it would prepare the HD and set it up without an image file. So install a clean (small 2-10gig) HH and see if it will make it bootable. If not it's more than likely a v2.
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Hmm, I don't think I have any spare Hard disks lying around, but the moment I find one I will give this a try (although I'm suspecting it is a v1).
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I have used v4.0.860 on several 1000 with no problems or slowdowns (in fact it got a little better, not worse).
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Nice! Alas, not in my case. Indeed it could be that it is the hard disk, or something else, but all I know is that it did not max out at 500kbyte/s before I updated the OS. I shall try another hard disk anyway (see above) and that might shed some light on the situation.
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See how your drive is set (Master or Cable Select) and then try the other one.
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The drive was set to Cable Select, switched it to Master, but have not got any real change out of it.