IF your pulling cool outside air through the rad, either way there won't be much of a performance difference. I have mine at the top pulling cool air in. To me it's a pain in mounting, kind of awkward but the tubing positions work great. Bleeding maybe an issue if the pump isn't strong enough. Air tends to get traped in it mounted up top. If I did it again, I'd have mine at the bottom of the case. Just seems easier to deal with.
I didn't see the first time. You would probably be better with the bigger heater core but you might not notice any performance until you started cooling a GPU or dualie cpus.
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