We're talking basic text files for the articles, right? No Word, or PDF crap.
If that's the case just use lovely Perl or Python(Eck) to replace old links with new links. You've got a mix of relative and full-path links, I'm sure, so it would just be a matter of determining which substitutions need to be made for those two types of links.
You can use the same script, with minor adjustments, on your img links as well.
You could very easily script the whole process with a little time and thought put into it. It's no biggie, just thought I'd give you another avenue to look down, instead of trying to do it by hand.
There is a good html parser for Perl, Html::TokeParser, that would allow you to split your pages into categorized chunks, like all the text, then font tags and finally any body tags and whatnot. What I said before about scripting the whole thing is still doable, just takes a bit of thought, and it would still end up taking less time than probably any other means.
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